Add python GitHub interface

* create a test issue
* fix typo in encrypted github token

.travis.yml

+language: python
+python:
+- '3.6'
 install:
 - source ./support/texlive_install.sh
+- pip install PyGithub
 cache:
   directories:
   - "/tmp/texlive"
@@ -24,7 +28,8 @@ deploy:
     repo: ag-gipp/bib
 env:
   global:
-    secure: eAJppYPl3FzB2+ntMmSLRh45pJpGSSUx/pWLl0sNbGy8bhVLBFMa9DiURVWJ1YKpKDPhjy/7hYn0BmAq8/fDkpp5DMdZu5E0dCk5Ay+AsZR4aikpWyhGJXHc2WEmxbHF/xTV0/9G/jmAhlznRw0CR6E9S5RB0PFOunBlRDmMPSeICL+V5K/2Yc/7Ha/ljZS/gJlSIwZcVHhlaZSLxdi/CRFSx7VgoTIEgzRBYb82y7VbfwpYC0lTknv5Opg82mpbSIb7AgNzGCjLnoHtXntsGQIS8Jcq/oUyNYPT1wocwH/UPNq29/IKQuczEZzxZp/nJq8D4xNmryRd4iNiL7TdA2nqPz7oxdXZTJZRSWP3EZYw5iubYnN8KeoFrRMMFhT91KrRR6wdUq1WoH0bR7I3EwAR/9VuJ1azAFfA1w/wfDeQuuxmHl5kqNerIXRA/gQIpbDNdRz6piic04PFmXTfy5rRCVc6RHj6+sSaZedokkLq2NG7FgOaFGxaYDPWopWKcPoS0L0vArKHjw/moifYW6mDW3zu0DffUeF8sSXtTCbP99tp8hMUmyFPGCTit4MMECu5zTgSraO3E+lle8KxTvw592juCyELXWRsQvXuoMmt8L/mUFpnapHApLA48yBHDBGYW8Cj0xWEacui/utXGFTVyEFY0wKOnuQxELIvXrI=
+  - secure: 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
+  - secure: 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
 before_install:
 - openssl aes-256-cbc -K $encrypted_125c18bb9738_key -iv $encrypted_125c18bb9738_iv
   -in bibbot.asc.enc -out bibbot.asc -d

README.md

@@ -18,6 +18,6 @@ For the interaction with GitHub independently from travis, we create
 a [personal access token](https://github.com/settings/tokens) and make 
 it available as environment variable 
 ```bash
-travis encrypt $GITHUB_TOKEN=<paste PAT> --add
+travis encrypt GITHUB_TOKEN=<paste PAT> --add
 ```
 

support/commitUp.sh

@@ -5,5 +5,5 @@ git config --global user.email "bibbot@ckurs.de"
 git config --global user.name "BibBot"
 git config --global user.signingkey "1617C27854592471"
 git commit -m -S "Reformat bib file" gipp.bib
-git remote add http https://bibbot:${GITHUB_TOKEN}@github.com/ag-gipp/bib.git > /dev/null 2>&1
+git remote add http https://${GITHUB_TOKEN}@github.com/ag-gipp/bib.git
 git push http HEAD:$TRAVIS_BRANCH

support/issue.py

+#!/usr/bin/env python
+# ST2/ST3 compat
+from __future__ import print_function
+from parseTeXlog import *
+import re
+import sys
+import os
+import os.path
+import subprocess
+import urllib3
+
+urllib3.disable_warnings()
+from github import Github
+
+token = os.environ['GITHUB_TOKEN']
+
+# To accommodate both Python 2 and 3
+if sys.version_info >= (3,):
+    advance_iterator = next
+else:
+    def _advance_iterator(it):
+        return it.next()
+
+
+    advance_iterator = _advance_iterator
+
+# If invoked from the command line, parse provided log file
+
+if __name__ == '__main__':
+    try:
+        logfilename = '../src/tex/allRefs.log'
+        if len(sys.argv) == 3:
+            extra_file_ext = sys.argv[2].split(" ")
+        data = open(logfilename, 'rb').read()
+        root_dir = os.path.dirname(logfilename)
+        errors, warnings, badboxes = parse_tex_log(data, root_dir)
+        print("")
+        print("Errors:")
+        for err in errors:
+            print(err)
+        print("")
+        print("Warnings:")
+        unrefs = {}
+        lastfile = ''
+        issue_content = ''
+        for warn in warnings:
+            matchObj = re.match( r'(.*?).tex:(\d+): Package natbib Warning: Citation `(.*?)\' on page (\d+) undefined on input line (\d+).', warn, re.M|re.I)
+            if matchObj:
+                label = "\n- [ ] [" + matchObj.group(3) + "](https://github.com/usnistgov/DRMF/blob/drmf/" + matchObj.group(1) + ".tex#L" + matchObj.group(2) + ")"
+                if (lastfile != matchObj.group(1) ):
+                    issue_content += "\n## " + matchObj.group(1) + " \n"
+                    lastfile = matchObj.group(1);
+                issue_content += label
+                unrefs[matchObj.group(3)] = label
+        # od = collections.OrderedDict(sorted(unrefs.items()))
+        if token:
+            g = Github(token)
+            repo = g.get_repo("ag-gipp/bib")
+            repo.create_issue("Issue title", issue_content)
+        # print(unrefs)
+        print("")
+    except Exception as e:
+        import traceback
+
+        traceback.print_exc()