Glucose TS

glucose_ts will help you to measure glucose concentrations closer to real time. When you measure a glucose concentration with a enzyme based sensor you normally have to wait for 5 - 10 minutes to get the glucose concentration. This projects aims for telling you this value earlier.

The blue curve is the actual measurements of the glucose sensor. The orange curve is a logistics growth model that is fitted to the sensor data. This model gets all the sensor measurements to fit a model. The idea would be to get the final voltage much earlier.

To ease the usage this package tries to follow the guidlines of scikit-learn estimators https://scikit-learn.org/stable/developers/develop.html

import glucose_ts

trained_model = glucose_ts.models.ExponentialDecay().fit(points_in_time, labels)

trained_model.predict(points_in_time)

Features

The package implements the following methods to explain and predict the glucose sensor voltage signal

• exponential decay
• logistic growth
• generalized logistic growth

Installation

Install the glucose package using pip by

cd glucose-prediction

pip install -e .

Here we assume that you want to install the package in editable mode, because you would like to contribute to it.

Contribute

• Issue Tracker: https://git.tu-berlin.de/ch.lange/glucose-prediction/-/issues
• Source Code: https://git.tu-berlin.de/ch.lange/glucose-prediction

Support

If you are having issues, please let us know.

CI Runner

For using CI we need a [runner](https://docs.gitlab.com/runner/) that executes all the tests. As we do not have a general CI runner for the group at this point in time we can do it on our local computer. In case you would like to use you local machine as a runner for Gitlab via Docker, you can do it this way:

1. [Install Docker](https://docs.docker.com/get-docker/)

2. Open your Gitlab Project in the browser

3. Go to Settings > CI/CD and expand the Runners section

4. In the section Set up a specific Runner manually under point 3 copy the registration token

5. Start your runner using the following command

   make start_gitlab_runner

6. Register the running runner via

   make register_gitlab_runner

   Now you need to answer the questions for registering your runner. (Please note that we choose the option where we store the config in a docker volume)

For more details check the Makefile. A detailed version for registering your runner can be found [here](https://docs.gitlab.com/runner/install/docker.html#option-2-use-docker-volumes-to-start-the-runner-container).